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Similarity Joins in Relational Database Systems
State-of-the-art database systems manage and process a variety of complex objects, including strings and trees. For such objects equality comparisons are often not meaningful and must be replaced by similarity comparisons. This book describes the concepts and techniques to incorporate similarity into database systems. We start out by discussing the properties of strings and trees, and identify the edit distance as the de facto standard for comparing complex objects. Since the edit distance is computationally expensive, token-based distances have been introduced to speed up edit distance computations. The basic idea is to decompose complex objects into sets of tokens that can be compared effi...
Computational Methods for Predicting Post-Translational Modification Sites
This volume describes computational approaches to predict multitudes of PTM sites. Chapters describe in depth approaches on algorithms, state-of-the-art Deep Learning based approaches, hand-crafted features, physico-chemical based features, issues related to obtaining negative training, sequence-based features, and structure-based features. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials and reagents, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols. Authoritative and cutting-edge, Authoritative and cutting-edge, Computational Methods for Predicting Post-Translational Modification Sites aims to be a useful guide for researchers who are interested in the field of PTM site prediction.
Computing and Combinatorics
This book constitutes the refereed proceedings of the 10th Annual International Computing and Combinatorics Conference, COCOON 2004, held in Jeju Island, Korea, in August 2004. The 46 revised full papers presented together with abstracts of 3 invited talks were carefully reviewed and selected from 109 submissions. The papers are organized in topical sections on data structures and algorithms, computational geometry, games and combinatorics, combinatorial optimization, graph algorithms, automata and learning theory, scheduling, graph drawing, complexity theory, parallel and distributed architectures, and computational biology.
Combinatorial Pattern Matching
The papers contained in this volume were presented at the 13th Annual S- posium on Combinatorial Pattern Matching, held July 3–5, 2002 at the Hotel Uminonakamichi, in Fukuoka, Japan. They were selected from 37 abstracts s- mitted in response to the call for papers. In addition, there were invited lectures by Shinichi Morishita (University of Tokyo) and Hiroki Arimura (Kyushu U- versity). Combinatorial Pattern Matching (CPM) addresses issues of searching and matching strings and more complicated patterns such as trees, regular expr- sions, graphs, point sets, and arrays, in various formats. The goal is to derive n- trivial combinatorial properties of such structures and to exploit these pro...
Computer and Information Sciences -- ISCIS 2006
This book constitutes the refereed proceedings of the 21st International Symposium on Computer and Information Sciences, ISCIS 2006, held in Istanbul, Turkey in October 2006. The 106 revised full papers presented together with five invited lectures were carefully reviewed and selected from 606 submissions.
